Workflow in Qiime2 virtual box

User Support
1

Hi,

I was wondering if there exists a workflow to start off with (I am new to Qiime2). I have fastq files and was wondering which are the scripts I have to run listed here http://qiime.org/scripts/. I have until now analyzed
NGS data from the human genome and have not much of an expertise with metagenomic data analysis pipelines.
Your guidance will be appreciated.
Regards,
Amit.

5

Hey there @amit - have you had a chance to review the extensive QIIME 2 docs? In particular, the Overview tutorial is a great place to start. Welcome to the QIIME 2 community! :t_rex: :qiime2:

7

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