I’m trying to get familiar with the q2-fragment-insertion plugin.
In the tutorial, it says that, after using it, we have to filter the input feature-table down to fragments included in the phylogeny.
So, from this point forward, I should only use the filtered_table.qza and insertion-tree.qza for all downstream analyses, including alpha and beta diversity analysis and to make the taxa bar plots? Would this be correct?
Thanks very much,