i want network analysis! so i tried OTU_cluster along "QIIME workflow"
but i have some metter...
i want cutadapt like this:
qiime cutadapt trim-paired \
--i-demultiplexed-sequences 2.demux/reads.qza \
--p-front-f TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGCCTACGGGNGGCWGCAG \
--p-front-r GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGACTACHVGGGTATCTAATCC \
--p-no-match-read-wildcards \
--p-discard-untrimmed \
--p-match-adapter-wildcards \
--o-trimmed-sequences 3.cutadapt/cutadapted_seq.qza \
--p-cores 2 \
--verbose
can i run like this??
or should i delete every N and H (in red circle)??
or should i add more N like 3rd row??
thank you for reading!