Weird Illumina MiSeq question, some help with import?

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Hi @ben,

The issue is simply that the file names are incorrect for EMP format, even though the format is correct. Try this:

  1. Make a new directory raw-seqs
  2. run the following commands (you will probably need to change the filepaths):
cp lane1_NoIndex_R1_001.fastq raw-seqs/forward.fastq.gz
cp lane1_NoIndex_R1_002.fastq raw-seqs/barcodes.fastq.gz
cp lane1_NoIndex_R1_003.fastq raw-seqs/reverse.fastq.gz
  1. Try importing again as EMP format

Let me know if that helps!

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