Another question I have is that if I want to run an indval test (indicator value test from labdsv package in R) or create a heatmap of taxa with higher abundance, I would want to use the relative abundance table right?
My thought is to use
qiime feature-table relative-frequency
to convert the absolute abundance to relative abundance and then go from here.
Also, do you have any recommendation on which package I should use for creating a heatmap for the top 10 or 25 taxa with the highest relative abundance?
Thank you so much for your help.