Hello!
I am currently trying to run Qiime2 on a remote HPC and installed using a conda environment. To install qiime i used
conda create --name qiime2
conda activate qiime2
conda install conda install -c "qiime2/label/r2022.8" qiime2
one the environment was activated and qiime2 was installed, i double checked the installation by using
qiime --help
and was given this error message
-bash: qiime: command not found
I have tried using the 2023.2 version as well as the previous version (shown here).
I performed conda list
to make sure everything was installed, and i've attached the environment below. I am not sure where to go from here. I did a little digging into the actual environment to see if i could located the qiime package to make sure everything was installed correctly but interestingly i could not find the actual qiime2 package anywhere within /home/hhallow1/.conda/envs/qiime
Any help would be appreciated! Thanks!