Unable to install QIIME 2 2026.1 using WSL

Hey @Chumei_Tang,

Thanks for following up and reporting. It appears that this is an issue related to setuptools (this is a deprecated package that has been fully removed in our current development cycle). This isn't something I've seen before, but let's see if a re-install fixes the issue. Try running the following:

conda install --force-reinstall setuptools

This should hopefully resolve these annoying messages, but I'd test out a few commands after completing this just to confirm.

Cheers :lizard:

Hi @lizgehret,

Apologies for the delayed reply, I missed one of the earlier notification emails in the thread, sorry for that!

I was able to solve the issue following what you said: by setting channel_priority to flexible and downgrading conda to 25.11.1.

Truly, a huge thank-you to you and to the entire QIIME community here. I’ve been using QIIME since the QIIME 1 days, and the support on this forum has always been incredible. Not only do I always get help, but I also learn a lot from the answers given those of many other users. Great people.

Thanks again for the time and help!

Thanks so much for the kind words @ja.morillo, we're always glad to help! Happy :qiime2:ing :slightly_smiling_face:

Hi @lizgehret ! It resolved the problem, thank you!

Would be glad to test out further commands for you to confirm. :slight_smile:

This worked for me after changing channel priority to "flexible"