Troubleshooting ALDEx2 installation

Hello,

I just tried to install ALDEx2 package and I encontoured the following issue:

[ QIIME is caching your current deployment for improved performance. This may take a few moments and should only happen once per deployment.
Traceback (most recent call last):
File “/home/villot/.conda/envs/qiime2-2019.4/bin/qiime”, line 11, in
sys.exit(qiime())
File “/home/villot/.conda/envs/qiime2-2019.4/lib/python3.6/site-packages/click/core.py”, line 764, in call
return self.main(*args, **kwargs)
File “/home/villot/.conda/envs/qiime2-2019.4/lib/python3.6/site-packages/click/core.py”, line 717, in main
rv = self.invoke(ctx)
File “/home/villot/.conda/envs/qiime2-2019.4/lib/python3.6/site-packages/click/core.py”, line 1132, in invoke
cmd_name, cmd, args = self.resolve_command(ctx, args)
File “/home/villot/.conda/envs/qiime2-2019.4/lib/python3.6/site-packages/click/core.py”, line 1171, in resolve_command
cmd = self.get_command(ctx, cmd_name)
File “/home/villot/.conda/envs/qiime2-2019.4/lib/python3.6/site-packages/q2cli/commands.py”, line 99, in get_command
plugin = self._plugin_lookup[name]
File “/home/villot/.conda/envs/qiime2-2019.4/lib/python3.6/site-packages/q2cli/commands.py”, line 75, in _plugin_lookup
import q2cli.core.cache
File “/home/villot/.conda/envs/qiime2-2019.4/lib/python3.6/site-packages/q2cli/core/cache.py”, line 400, in
CACHE = DeploymentCache()
File “/home/villot/.conda/envs/qiime2-2019.4/lib/python3.6/site-packages/q2cli/core/cache.py”, line 61, in init
self._state = self._get_cached_state(refresh=refresh)
File “/home/villot/.conda/envs/qiime2-2019.4/lib/python3.6/site-packages/q2cli/core/cache.py”, line 107, in _get_cached_state
self._cache_current_state(current_requirements)
File “/home/villot/.conda/envs/qiime2-2019.4/lib/python3.6/site-packages/q2cli/core/cache.py”, line 200, in _cache_current_state
state = self._get_current_state()
File “/home/villot/.conda/envs/qiime2-2019.4/lib/python3.6/site-packages/q2cli/core/cache.py”, line 238, in _get_current_state
plugin_manager = qiime2.sdk.PluginManager()
File “/home/villot/.conda/envs/qiime2-2019.4/lib/python3.6/site-packages/qiime2/sdk/plugin_manager.py”, line 44, in new
self._init()
File “/home/villot/.conda/envs/qiime2-2019.4/lib/python3.6/site-packages/qiime2/sdk/plugin_manager.py”, line 59, in _init
plugin = entry_point.load()
File “/home/villot/.conda/envs/qiime2-2019.4/lib/python3.6/site-packages/pkg_resources/init.py”, line 2434, in load
return self.resolve()
File “/home/villot/.conda/envs/qiime2-2019.4/lib/python3.6/site-packages/pkg_resources/init.py”, line 2440, in resolve
module = import(self.module_name, fromlist=[‘name’], level=0)
File “/home/villot/.conda/envs/qiime2-2019.4/lib/python3.6/site-packages/q2_aldex2/plugin_setup.py”, line 5, in
from q2_types.feature_data import FeatureData, Differential
ImportError: cannot import name ‘Differential’ ]

It is a shame since I can not have access to Qiime 2 anymore neither… @dgiguer - do you have an idea what is the issue? I will appreciate your quick help,
Cheers,
Clothilde

A post was merged into an existing topic: ALDEx2 Troubleshooting Installation