I downloaded and merged a few deblurred biom tables from qiita and want to build a tree in QIIME2.
The deblur was done without hashes, while the rep-seqs comes from hashes (currently the repseqs are in the biom table). Is there a workaround to create a repseqs file?
However, some of the steps in Qiita have changed and I think having a shorter answer here is worth it. Anyway, the biggest difference is that we shouldn’t have the lower/upper case issue not present anymore so we just need to run: