Hi to all.
I’m analyzing a project and I get a result what I need, a taxa bar plot file.
But view.qiime2.org can’t show the plots with it. I guess that’s because samples on it are too many… over 400.
Is there a way to see the result?? I think
Analyze with groups from the first step, like sampled location or specific treatment. But it takes some time to do from the beginning so I think this is the last option
Collapse features to level 7 so that I can get only the information what I need for my analysis. I don’t try it yet since all of cores are being used now. I think this is the most reasonable option for me…
Is there another option to do? Or if my options I suggest are wrong, could you tell me which that is?
And this is a little bit off-subject, some of my samples of another project in taxa bar plot show only class level classification. I used SILVA full length pre-trained classifier. Do I have to train my own classifier for these samples? How I understand about SILVA full length pre-trained classifier is that it is trained with ALL taxonomy and rep-seqs(16S, 18S ,ITS) not limited on V4, but whole length of them. That’s why I chose to use it even though it is time-consuming…
If there is no problem what I did, then is it a problem of my samples sequence quality??