Hi,
I have used the commands “qiime diversity core-metrics-phylogenetic” to get the folder “core-metrics-results”, which included bray_curtis_emperor.qzv, jaccard_emperor.qzv etc. I uploaded these .qzv files to view.qiime2.org and got the PCoA plots.
But I do not know another way to get PCoA plot by the command of “qiime diversity pcoa-biplot”. What is the difference between PCoA plots generated by pcoa-biplot and by emperor.
Thanks for you very much
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Hi!
In the biplot, you will have the same pcoa but with several features, most explaining the differences, plotted over the pcoa
PCOA from core metrics
pcoa link
Biplot
biplot link
Thanks very much. I got it.
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