# taxonomy: qiime feature-classifier command

**URL:** https://forum.qiime2.org/t/taxonomy-qiime-feature-classifier-command/10964
**Category:** User Support
**Created:** [August 6, 2019, 3:16pm UTC](https://forum.qiime2.org/t/taxonomy-qiime-feature-classifier-command/10964 "2019-08-06T15:16:07Z")
**Posts on this page:** 9
**Page:** 1

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### Author: ![Faiga](https://forum.qiime2.org/letter_avatar_proxy/v4/letter/f/b5e925/32.png) [@Faiga](https://forum.qiime2.org/u/Faiga)
#### Post date: [August 6, 2019, 3:16pm UTC](https://forum.qiime2.org/t/taxonomy-qiime-feature-classifier-command/10964/1 "2019-08-06T15:16:07Z")

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Hello!  
I'm I having some difficulty in using the "qiime feature-classifier" command.  
I downloaded the gg-13-8-99-515-806-nb-classifier, and wanted to run the commands:  
qiime q2-feature-classifier classify-sklearn   
--i-classifier gg-13-8-99-515-806-nb-classifier.qza   
--i-reads rep-seqs.qza   
--o-classification taxonomy.qza  
I got the error:  
Error: QIIME 2 has no plugin/command named 'feature-classifier'.  
I am using qiime 2019-4  
What am I doing wrong?  
Please help.

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### Author: ![timanix](https://forum.qiime2.org/user_avatar/forum.qiime2.org/timanix/32/17879_2.png) [@timanix](https://forum.qiime2.org/u/timanix)
#### Post date: [August 6, 2019, 3:24pm UTC](https://forum.qiime2.org/t/taxonomy-qiime-feature-classifier-command/10964/2 "2019-08-06T15:24:34Z")

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Hi! Try to remove "q2-" before feature-classifier

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### Author: ![Faiga](https://forum.qiime2.org/letter_avatar_proxy/v4/letter/f/b5e925/32.png) [@Faiga](https://forum.qiime2.org/u/Faiga)
#### Post date: [August 6, 2019, 4:25pm UTC](https://forum.qiime2.org/t/taxonomy-qiime-feature-classifier-command/10964/4 "2019-08-06T16:25:36Z")

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Hi timanix,  
Thanks for trying to help. Unfortunately the problem persists...  
I get the same error.  
Faiga

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### Author: ![ebolyen](https://forum.qiime2.org/user_avatar/forum.qiime2.org/ebolyen/32/11_2.png) [@ebolyen](https://forum.qiime2.org/u/ebolyen)
#### Post date: [August 6, 2019, 4:38pm UTC](https://forum.qiime2.org/t/taxonomy-qiime-feature-classifier-command/10964/5 "2019-08-06T16:38:48Z")

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Hey @Faiga,

Could you run the following commands in your environment:

```bash
conda list

```

and

```bash
qiime info

```

* * *

Also maybe provide a screenshot of the command you ran and the error in the terminal? What you've provided doesn't quite line up with what q2cli on QIIME 2 2019.4 will do in the situation you've described, so I would just like to confirm.

Thanks!

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<div class="post-metadata">

### Author: ![Faiga](https://forum.qiime2.org/letter_avatar_proxy/v4/letter/f/b5e925/32.png) [@Faiga](https://forum.qiime2.org/u/Faiga)
#### Post date: [August 6, 2019, 4:50pm UTC](https://forum.qiime2.org/t/taxonomy-qiime-feature-classifier-command/10964/6 "2019-08-06T16:50:17Z")

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Hi @ebolyen,  
Thanks for your reply.  
I ran the commands. The screenshot is as follows:

 ![image](https://forum-qiime2-org.s3.dualstack.us-west-2.amazonaws.com/original/2X/1/174e8414d8cf388a5edacb81eaf6aa70c626768a.png)  
Any ideas?  
Faiga

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<div class="post-metadata">

### Author: ![ebolyen](https://forum.qiime2.org/user_avatar/forum.qiime2.org/ebolyen/32/11_2.png) [@ebolyen](https://forum.qiime2.org/u/ebolyen)
#### Post date: [August 6, 2019, 4:53pm UTC](https://forum.qiime2.org/t/taxonomy-qiime-feature-classifier-command/10964/7 "2019-08-06T16:53:25Z")

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Hey @Faiga,

It appears that the feature-classifier plugin is not installed based on the tail end of the `qiime info` I see in your screenshot.

This means that something went wrong when creating the QIIME 2 environment (or sometime afterwards)

I would recommend destroying the environment and reinstalling it. It's possible that at some point you upgraded scikit-learn, conda would have provided the option of uninstalling feature-classifier to solve the environment specification (thus removing the plugin).

I think starting over with the environment will be the easiest.

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<div class="post-metadata">

### Author: ![Faiga](https://forum.qiime2.org/letter_avatar_proxy/v4/letter/f/b5e925/32.png) [@Faiga](https://forum.qiime2.org/u/Faiga)
#### Post date: [August 6, 2019, 4:56pm UTC](https://forum.qiime2.org/t/taxonomy-qiime-feature-classifier-command/10964/8 "2019-08-06T16:56:11Z")

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Hi @ebolyen,  
Sorry for the "basic" question but, does this mean I have to delete the qiime2 version installed in my computer and install it again?  
Thanks again,  
Faiga

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<div class="post-metadata">

### Author: ![ebolyen](https://forum.qiime2.org/user_avatar/forum.qiime2.org/ebolyen/32/11_2.png) [@ebolyen](https://forum.qiime2.org/u/ebolyen)
#### Post date: [August 6, 2019, 4:57pm UTC](https://forum.qiime2.org/t/taxonomy-qiime-feature-classifier-command/10964/9 "2019-08-06T16:57:24Z")

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No worries, and yes! You can do that with this command:

```bash
conda env remove -n qiime2-2019.4

```

Since we've just released a new version (2019.7) you may as well update to that while you are at it 😄

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### Author: ![system](https://forum-qiime2-org.s3.dualstack.us-west-2.amazonaws.com/original/3X/2/1/21af5fe23cb6f4579467c66a9ed94e55274ca7bd.svg) [@system](https://forum.qiime2.org/u/system)
#### Post date: [September 6, 2019, 11:30pm UTC](https://forum.qiime2.org/t/taxonomy-qiime-feature-classifier-command/10964/12 "2019-09-06T23:30:03Z")

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