Hi!
I would like to know how to obtain the table with relative abundance?!
I did the steps of clustering, taxonomy, alpha and beta diversity analysis. And is possible in qiime2 obtain the taxa charts as in qiime (figure and table)?
Thanks!
Hello @anacinacio,
If you have a FeatureTable[Frequency] you can make a FeatureTable[RelativeFrequency] with qiime feature-table relative-frequency.
Are you referring to the bar plot generated by qiime taxa barplot?
I made feature-table relative-frequency and the output is in Biom format. Do I have to convert it to csv to have access to the table and the data present, to have relative abundance? Or is there another alternative?
No, I already have that one. I wanted to obtain this type of graph with a table (figure attached), is it possible?
Hello @anacinacio,
Do I have to convert it to csv to have access to the table and the data present, to have relative abundance?
To have direct access to the raw data, yes. You can unzip the artifact and then use the biom tool to convert the biom table to tsv.
I wanted to obtain this type of graph with a table (figure attached), is it possible?
That specific figure is only a qiime 1 figure.
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