I'm working with pure bacterial genomes sequenced in Illumina or PacBio. I'm assembling them using Patricbrc.org and I'd like to learn about tools people use to check for genome completeness (to decide if we need to re-sequence or not). I saw GenomeQC in some websites but the results I got were not really readable. Any suggestions on softwares to use? Ideally web-server but command is also fine.
Thanks so much!