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What q2 command is required to split a feature table (i.e., the q1 equivalent for “split_otu_table.py”) by a piece of metadata (e.g., time)?
I came across ‘qiime sample-classifier split-table’ but this generated a hypothetical sample table, and not a split of the real data.
PS - so sorry… mistakenly withdrew previous inquiry.
qiime feature-table filter-samples. You will need to run N times, where N = the number of new tables you want to produce (N groups in your metadata).
Definitely not what you want; that generates a random split.