Hi everyone - I’m trying to import my sequencing data with the following commands:
qiime tools import \
–input-path 2_fastq \
The 2_fastq folder contains the sequences and is in the Sequencing folder (my directory).
The problem is that when the emp-paired-end-sequences.qza file is generated it doesn’t go into the 2_fastq folder but in the main directory (Sequencing folder).
Is there a way of specifying the directory so that it goes into the subfolder (2_fastq) instead?