Hi @clairewill22 and @Nicholas_Bokulich,
It looks pypi has not caught up with the master of sourcetracker2. There was also an error on the install with the citations.bib not tracking. I just put in a PR to their master repo with a fix for that. In the meantime, if you want to just use my bug fixed branch for now you can install it by running:
pip install git+https://github.com/cameronmartino/sourcetracker2@fixq2citations
and then
qiime dev refresh-cache
There is a tutorial here on using st2 with QIIME2.
I will also note that I also made a Q2 plugin for FEAST that is here (PR is here). You can install that by first installing FEAST.
conda install -c bioconda -c conda-forge -c r bioconductor-phyloseq r-devtools r-magrittr r-dplyr r-vgam r-tidyr r-vegan r-reshape2 r-rcpp r-rcpparmadillo r-gridextra r-ggplot2 r-ggthemes
> R
> devtools::install_github("cozygene/FEAST")
> quit()
running:
pip install git+https://github.com/cameronmartino/FEAST@FEAST_beta
then qiime dev refresh-cache
The tutorial for Q2-FEAST is here.