# Some troubles with data importation

**URL:** https://forum.qiime2.org/t/some-troubles-with-data-importation/2305
**Category:** User Support
**Tags:** demux, barcode, import
**Created:** [December 21, 2017, 12:55pm UTC](https://forum.qiime2.org/t/some-troubles-with-data-importation/2305 "2017-12-21T12:55:56Z")
**Posts on this page:** 6
**Page:** 1

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### Author: ![zhenhaoluo](https://forum.qiime2.org/letter_avatar_proxy/v4/letter/z/b9e5f3/32.png) [@zhenhaoluo](https://forum.qiime2.org/u/zhenhaoluo)
#### Post date: [December 21, 2017, 12:55pm UTC](https://forum.qiime2.org/t/some-troubles-with-data-importation/2305/1 "2017-12-21T12:55:56Z")

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Hi,  
Hello, there's some troubles with my data importation. There are about more than 100 samples in my dataset, and I have sequenced them in two run, which some of the samples have the same barcode, e.g. Sample 1 in Run I may have the barcode 67 while the Sample 100 in Run II may have the sample barcode 67. And now I would like to analyze them in one dataset. How could I import the data? Which kind of data format should I use?

Thank you!  
Zhenhao Luo

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### Author: ![thermokarst](https://forum.qiime2.org/letter_avatar_proxy/v4/letter/t/8e7dd6/32.png) [@thermokarst](https://forum.qiime2.org/u/thermokarst)
#### Post date: [December 22, 2017, 7:30pm UTC](https://forum.qiime2.org/t/some-troubles-with-data-importation/2305/5 "2017-12-22T19:30:42Z")

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Hi @zhenhaoluo!

Are your samples already demultiplexed? If so, then the barcodes don't matter -- that is only for demultiplexing multiplexed reads. One thing to keep in mind though is if you plan on running your reads through q2-dada2, you will want to import both of these runs individually, because DADA2's error model assumes that reads are processed on a per-run basis. See the [FMT Tutorial](https://docs.qiime2.org/2017.12/tutorials/fmt/) for an example of processing multiple runs in QIIME 2.

If your data _isn't_ demultiplexed, you might be in a difficult place - QIIME 2 isn't able to account for runs as part of the demultiplexing process, so you would need to find a tool that is capable of doing that (I personally don't know of anything that can handle these kinds of data), or writing out a custom script.

Keep us posted! 🦖

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### Author: ![ebolyen](https://forum.qiime2.org/user_avatar/forum.qiime2.org/ebolyen/32/11_2.png) [@ebolyen](https://forum.qiime2.org/u/ebolyen)
#### Post date: [December 22, 2017, 7:39pm UTC](https://forum.qiime2.org/t/some-troubles-with-data-importation/2305/7 "2017-12-22T19:39:23Z")

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> [@thermokarst](#):
>
> If your data isn’t demultiplexed, you might be in a difficult place - QIIME 2 isn’t able to account for runs as part of the demultiplexing process, so you would need to find a tool that is capable of doing that (I personally don’t know of anything that can handle these kinds of data), or writing out a custom script.

I think @zhenhaoluo would be able to just import and demultiplex each run separately. Then the overlapping barcodes don't matter, and the feature-tables can be merged later on downstream (like in the FMT tutorial).

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### Author: ![zhenhaoluo](https://forum.qiime2.org/letter_avatar_proxy/v4/letter/z/b9e5f3/32.png) [@zhenhaoluo](https://forum.qiime2.org/u/zhenhaoluo)
#### Post date: [December 27, 2017, 3:17pm UTC](https://forum.qiime2.org/t/some-troubles-with-data-importation/2305/8 "2017-12-27T15:17:51Z")

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Hi thermokarst!  
I may try to do as ebolyen said, Thanks very much~

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### Author: ![zhenhaoluo](https://forum.qiime2.org/letter_avatar_proxy/v4/letter/z/b9e5f3/32.png) [@zhenhaoluo](https://forum.qiime2.org/u/zhenhaoluo)
#### Post date: [December 27, 2017, 3:17pm UTC](https://forum.qiime2.org/t/some-troubles-with-data-importation/2305/9 "2017-12-27T15:17:52Z")

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Hi ebolyen!  
Thank you and I will try to do something as you said~

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### Author: ![system](https://forum-qiime2-org.s3.dualstack.us-west-2.amazonaws.com/original/3X/2/1/21af5fe23cb6f4579467c66a9ed94e55274ca7bd.svg) [@system](https://forum.qiime2.org/u/system)
#### Post date: [January 27, 2018, 9:18pm UTC](https://forum.qiime2.org/t/some-troubles-with-data-importation/2305/10 "2018-01-27T21:18:03Z")

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