Hello, I am new to QIIME and trying to learn how to use it. I have gone through the tutorials and now I am trying to run some basic analysis to get the hang of it. So far, I have successfully imported data in QIIME using the manifest format, where the title of each file is the barcode, and I shoul…

if you imported via the manifest format (with each sample originally in its own fastq file), then creating a visualization of you demux file should show you an interactive quality plot. So you imported with a code similar to this? qiime tools import \ --type 'SampleData[PairedEndSequencesWithQualit…

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Selecting parameters for DADA2

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