Hello, I am working on 16S seq pipeline and segmentation error is happening in differential abundance process. I appreciate you kind help.
Thanks
Hello, I am working on 16S seq pipeline and segmentation error is happening in differential abundance process. I appreciate you kind help.
Thanks
Hi @anu,
Welcome to the forum!
Please note that in order to recruit proper help youâll need to provide a lot more information about your issues here. As the automatic new-post message says, please provide us at minimum with the exact (copy & paste) commands you are using, the exact error messages you are receiving (include the --verbse
flag and rerun your command), the qiime2 version being used, and if you are allowed to share, usually the .qza
file being worked on can tremendously help troubleshooting.
Hello, I am not allowed to share the files. the error i am getting is given below,
tail: cannot open âfeature-table-json.userLabel..metastatsâ for reading: No such file or directory
Error in read.table(file = paste0("./", sample), sep = â,â, header = T, :
no lines available in input
Execution halted
cut: 'metastats..tsvâ: No such file or directory
Hi @anu,
Unfortunately there still isnât enough information here for us to troubleshoot your issue. Please see my previous reply for minimum information that we need to help and provide us with those. Of note, the message you are showing is actually not a qiime2 error itself but rather an R specific message indicating that the metastats.tsv
file is not found in the folder you have directed it to. But without knowing the exact commands youâve typed, and without the full error message (âverbose + not just a snippet of it) it is not possible to troubleshoot. We donât even know which plugin or which qiime2 version you are using.