For my MSc internship I am using qiime2 to analyse the gut microbiome of chickens.
I was reading up on the runtime of the q2 fragment insertion command and was wondering whether my current analysis would be too extensive to run on my own computer (Intel(R) Core(TM) i5-8250U CPU @ 1.60GHz 1.80 GHz, 8GB RAM)
I am analysing 12 samples which have been sequenced with novaseq6000
I have attached the table computed from the feature-table summary to this message
table.qzv (458.3 KB)
what runtime could I expect while running fragment-insertion? If this runtime is very long: is it possible to "crop" my data, and furthermore, is this scientifically allowed? what would you advise me to do?
I hope you can advise me in my first microbiome research!
Thank you in advance!