Returning FASTQ files after qiime dada2 denoise

Hi guys!

Do you know if there are any tools/ways in which I export the FASTQ files after using qiime dada2 tool? I am using another qiime in a pipeline which does not allow me to use some specific flags and I would love to use them separately and import the output as input in the pipeline.

I haven't seen any way that you could export FeatureData[Sequence] into FASTQ and that would be an interesting feature to use.

Thank you very much!


Every QIIME artifact is an archive. Open the data with any archiver app, go to the data folder and retrieve sequencing files from there.


Thank you very much!

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