Returning FASTQ files after qiime dada2 denoise

General Discussion
1

Hi guys!

Do you know if there are any tools/ways in which I export the FASTQ files after using qiime dada2 tool? I am using another qiime in a pipeline which does not allow me to use some specific flags and I would love to use them separately and import the output as input in the pipeline.

I haven't seen any way that you could export FeatureData[Sequence] into FASTQ and that would be an interesting feature to use.

Thank you very much!

2

Hello,

Every QIIME artifact is an archive. Open the data with any archiver app, go to the data folder and retrieve sequencing files from there.

Cheers
V

5

Thank you very much!

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