Hello @gregcaporaso,
Thank you, I manage to import the files.
I might have some other questions, I used vsearch to dereplicate my sequences and I am trying to remove the singletons from those sequences and I don’t find how (I have found only the removal of singletons for the feature table)…
Sorry if my questions are obvious but as a newbie I am totally lost
Hi @AmeLaporte,
The way to achieve this will be to first remove the singletons from the feature table (see here) and then filter your sequences based on that feature table (see qiime feature-table filter-seqs - you’ll use the --i-table parameter).