Hello all I need some help regarding the taxonomic abundance. i have got two datasets taxonomy and functional pathway abundance. I want to known the relative abundance of a particular taxa in a particular function ( say relative abundance of proteobacteria in glycolysis pathway). How can I do th…

@divyaprince321 , It's not clear to me what your data looks like, or what your goals are. If you can provide more information on what type of data you're working with, what you've tried (or would like to try), and what your results might look like, that will probably make it easier for us to help. B…

Hi ChrisKeefe Thanks I am done with it. However I need to work on something that I am confused with I have got taxon id (1000148), but I need to decode it to particular taxa. I mean to say that what bacterial taxa is it. I am confused and not able to delineate these ids in ASVs file to particular …

[image] divyaprince321: Thanks I am done with it. Glad to hear it! You might consider sharing your approach here, so other users can benefit from your hard work. [image] divyaprince321: I have got taxon id (1000148), but I need to decode it to particular taxa. I mean to say that what bac…

Hi Chris I got created the biom table ( feature biom ) and it gave the ids now I want proper taxonomy. for convenience I am attaching files feature-table.biom (2.0 MB)

It sounds like those are feature/ASV IDs, then, and not directly related to your taxonomy? How did you create the biom table? If you're trying to figure out how to perform taxonomic analysis, take a look at the tutorials. Moving Pictures and Parkinson's Mouse both have sections on assigning taxonom…

Hello All I am trying to known the contribution of each taxa towards a particular function. For that I have done my analysis and I have got two files 1) the taxon id along with taxonomy and 2) the contribution of each taxa to function. Now the problem is that the taxon id are relatively larger in …

Hi @divyaprince321 - I merged this post into a previous topic you had created. It doesn't look like you responded to @ChrisKeefe 's support questions from ~11 days ago - perhaps you could start there?

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regarding the relative taxonomic abundance

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