I have a question about the QIIME assign_taxonomy.py script with the RDP classifier.
When I run the assign_taxonomy.py script several times on the same input data, I get slightly different results. For example, sometimes an OTU is assigned up to genus level, other times the same ID sequence is assigned up to family level only.
Is it possible to set a seed, so that to get the exact same results when running the script several times on the same input data?
Also, will the RDP classifier be implemented in QIIME2?
Thanks a lot.