Hi, @mortonjt ! I have some questions about 'Convergence summary' in q2-mmvec. Firstly, when I ran 'qiime mmvec summarize'. I found the first picture in 'Convergence summary' was blank. According to the prompt in 'Convergence summary', I'd better try to set '--p-summary-interval 1', but I actually…

hmm .... that is very odd. How was your train/test split determined? Did you automatically generate the splits, or did you manually specify them in your metadata?

Thanks for your reply! It’s probably because my English and my understanding of MMvec are pretty limited, I’m sorry that I’m not quite sure what you mean. I just ran q2-mmvec following the example steps above GitHub.And in order to make results obvious, I anaylzed the microbiome and metabolome that…

Hi @hesterlee no worries. I was referring to the --training-column if you specified that or now. [image] GitHub - biocore/mmvec: Neural networks for microbe-metabolite interaction... Neural networks for microbe-metabolite interaction analysis

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