Hello, I have installed the qiime2R package into R on my windows machine. I am able to successfully run commands which only have a single argument since I can designate the exdir path. The following two commands work fine.
otus<-read_qza(“table.qza” , tmp=“C:\tmp”)
otus<-read_qza(“table.qza” , tmp=“C:/tmp”)
When I run the qza_to_phyloseq command…
I receive the the error…
Error in unzip(file, exdir = tmp) : ‘exdir’ does not exist
How best can the exdir be designated in a windows R environment?