Its my first day to install QIIME2, its successfully installed but not activated. i created environment named qiime2 and install QIIME2 by command conda install -c qiime2 qiime2 , this installed but when i check it by command qiime --help its show no command, when i checked conda list it showed present of qiime2 in conda list
Hi @Tahir, welcome to !
As outlined here, you need to activate your environment by using the following command (assuming you are using the latest version):
conda activate qiime2-2022.2
Then you should be able to successfully run
Hello, thanks for your reply i have activated conda environment qiime2-2022.2 but qiime --help command still not working. please see the screenshot
Given your first screen shot, you are already in the
qiime2-2022.2 conda environment, as evidenced by the
(qiime2-2022.2) -bash-4.2$ prompt. So, there is no need to run
conda activate qiime2-2022.2 again.
I also just noticed that you installed QIIME 2 by using the command
conda install -c qiime2 qiime2. This is incorrect. The proper way to install is outlined here.
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