qiime2 installation error with bioconda::bioconductor-genomeinfodbdata-1.2.4

Installation error using command
conda env create -n my_work --file qiime2-2021.11-py38-linux-conda.yml

In Last step of
Executing transaction: / Enabling notebook extension jupyter-js-widgets/extension...
- Validating: OK

done
ERROR conda.core.link:_execute(699): An error occurred while installing package 'bioconda::bioconductor-genomeinfodbdata-1.2.4-r40hdfd78af_2'.
Rolling back transaction: done
class: LinkError
message:
post-link script failed for package bioconda::bioconductor-genomeinfodbdata-1.2.4-r40hdfd78af_2
location of failed script: /home/manish/miniconda3/envs/my_work/bin/.bioconductor-genomeinfodbdata-post-link.sh
==> script messages <==

==> script output <==
stdout: ERROR: post-link.sh was unable to download any of the following URLs with the md5sum b5374ca4c7ab353baea9dc2f39a96ebf:
https://bioconductor.org/packages/3.12/data/annotation/src/contrib/GenomeInfoDbData_1.2.4.tar.gz
https://bioarchive.galaxyproject.org/GenomeInfoDbData_1.2.4.tar.gz
https://depot.galaxyproject.org/software/bioconductor-genomeinfodbdata/bioconductor-genomeinfodbdata_1.2.4_src_all.tar.gz

I already checked everything on internet, please suggest a real solution thanks.

Hello Guys, It was some proxy error or related to firewall (may be), just installed the qiime 2 without proxy setting for internet (removed proxy setting from everywhere /etc/apt/apt.conf, ~/.bashrc, .condarc , /etc/bash.bashrc) and it gave no error, installed perfectly.
Thanks.

1 Like

This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.