I am having a problem running these commands in QIIME 2.
I tried using chmod u+x and installing the cutadapt but the command cannot be found.
I must be missing some step which I should do before it will run.
Hope you can help me with this one.
I have recategorized this topic as “other bioinformatics tools” because those are not QIIME 2 commands, even if they use QIIME 2 under the hood. I recommend getting in touch with whoever wrote those scripts to troubleshoot.
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