I run ubuntu 18.04 under windows 10 (wsl), and installed qiime2 2020.06 successfully. according to "Moving Pictures” tutorial, after i run
> qiime diversity core-metrics-phylogenetic \
> --i-phylogeny rooted-tree.qza \
> --i-table table.qza \
> --p-sampling-depth 1103 \
> --m-metadata-file sample-metadata.tsv \
> --output-dir core-metrics-results
i got this error
and the error log below:
/home/mkkuser/miniconda2/envs/qiime2-2020.6/lib/python3.6/site-packages/sklearn/metrics/pairwise.py:1761: DataConversionWarning: Data was converted to boolean for metric jaccard
warnings.warn(msg, DataConversionWarning)
/home/mkkuser/miniconda2/envs/qiime2-2020.6/lib/python3.6/site-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:152: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.010007913933374881 and the largest is 3.2706161221743475.
RuntimeWarning
/home/mkkuser/miniconda2/envs/qiime2-2020.6/lib/python3.6/site-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:152: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.006226621281657183 and the largest is 2.4503863256040694.
RuntimeWarning
/home/mkkuser/miniconda2/envs/qiime2-2020.6/lib/python3.6/site-packages/skbio/stats/ordination/_principal_coordinate_analysis.py:152: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.016049091690797244 and the largest is 2.3773044829236856.
RuntimeWarning
Traceback (most recent call last):
File "/home/mkkuser/miniconda2/envs/qiime2-2020.6/lib/python3.6/site-packages/q2cli/commands.py", line 329, in call
results = action(**arguments)
File "", line 2, in core_metrics_phylogenetic
File "/home/mkkuser/miniconda2/envs/qiime2-2020.6/lib/python3.6/site-packages/qiime2/sdk/action.py", line 245, in bound_callable
output_types, provenance)
File "/home/mkkuser/miniconda2/envs/qiime2-2020.6/lib/python3.6/site-packages/qiime2/sdk/action.py", line 512, in callable_executor
aliased_result = output._alias(prov)
File "/home/mkkuser/miniconda2/envs/qiime2-2020.6/lib/python3.6/site-packages/qiime2/sdk/result.py", line 163, in _alias
self.type, self.format, clone_original, provenance_capture)
File "/home/mkkuser/miniconda2/envs/qiime2-2020.6/lib/python3.6/site-packages/qiime2/core/archive/archiver.py", line 316, in from_data
Format.write(rec, type, format, data_initializer, provenance_capture)
File "/home/mkkuser/miniconda2/envs/qiime2-2020.6/lib/python3.6/site-packages/qiime2/core/archive/format/v5.py", line 21, in write
provenance_capture)
File "/home/mkkuser/miniconda2/envs/qiime2-2020.6/lib/python3.6/site-packages/qiime2/core/archive/format/v1.py", line 19, in write
provenance_capture)
File "/home/mkkuser/miniconda2/envs/qiime2-2020.6/lib/python3.6/site-packages/qiime2/core/archive/format/v0.py", line 62, in write
data_initializer(data_dir)
File "/home/mkkuser/miniconda2/envs/qiime2-2020.6/lib/python3.6/site-packages/qiime2/sdk/result.py", line 158, in clone_original
copy_function=os.link) # Use hardlinks
File "/home/mkkuser/miniconda2/envs/qiime2-2020.6/lib/python3.6/shutil.py", line 365, in copytree
raise Error(errors)
shutil.Error: [('/tmp/qiime2-archive-8sb63ska/fa289b1f-4160-490a-a82c-182d43c40f5f/data/feature-table.biom', '/tmp/qiime2-archive-9j1lo8ax/d1df3e07-0ea2-4d67-b2af-09ae611c5e8c/data/feature-table.biom', "[Errno 13] Permission denied: '/tmp/qiime2-archive-8sb63ska/fa289b1f-4160-490a-a82c-182d43c40f5f/data/feature-table.biom' -> '/tmp/qiime2-archive-9j1lo8ax/d1df3e07-0ea2-4d67-b2af-09ae611c5e8c/data/feature-table.biom'")]
so my question is how to solve it. if it needs more infomation and someone have solution , please let me know, thanks a lot!