Thanks for the responses. The suggested approach about adding a line to the matplotlibrc solved the problem. "qiime info" now shows the installed plugins. (see below). In a possibly related issue I was verifying the environment by working through the Moving Pictures tutorial which works until I atte…

Hi @steviep , This issue is related to the headless server issue from before . qiime tools view uses the registered system application to open the visualization index (e.g. index.html -> web browser, index.pdf -> pdf viewer, index.txt -> text editor). Without a desktop environment, qiime has no way of…

Thanks for the rapid response. I just added the desktop package and everything was fine after that. Specifically I was able to successfully view the artifact. I'm evaluating scenarios for myself and others in my group and since we have a mixture of OSX and Windows (with X Server software) we might d…

Also the issues I was having with npm disappeared once I got sorted out with the ubuntu-desktop. Thanks again

Maybe this should be a different topic, but I just wanted to point out alternative for viewing qiime2 visualizations on a headless server: @Gluque has created a tool that launches a simple web server to quickly visualize the contents locate into the data folder from a Qiime 2 visualization artifact…

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