To Whom it May Concern:
Hello. I am trying to run a few practice trials on getting sequences from NCBI via q2-fondue prior to a larger scale analysis. The code was working just fine up until dada2 where I encountered a common error that the forum believes is a storage issue. I have contacted the SCINet Ceres cluster for more information as I am using this resource. However, to see if a smaller set of sequences would work I ran the qiime tools import commands as I did previously. This time, I encountered the following error message:
(fondue) [anthony.frazier@ceres meta_analysis]$ qiime tools import
Traceback (most recent call last):
File "/software/el9/apps/qiime2/2023.7/lib/python3.8/site-packages/q2cli/builtin/tools.py", line 266, in import_data
artifact = qiime2.sdk.Artifact.import_data(type, input_path,
File "/software/el9/apps/qiime2/2023.7/lib/python3.8/site-packages/qiime2/sdk/result.py", line 300, in import_data
output_dir_fmt = pm.get_directory_format(type_)
File "/software/el9/apps/qiime2/2023.7/lib/python3.8/site-packages/qiime2/sdk/plugin_manager.py", line 388, in get_directory_format
TypeError: Semantic type NCBIAccessionIDs is invalid, either because it doesn't have a compatible directory format, or because it's not registered.
An unexpected error has occurred:
Semantic type NCBIAccessionIDs is invalid, either because it doesn't have a compatible directory format, or because it's not registered.
See above for debug info.
Again, this worked previously and I have that previous output. So why all of the sudden does this not work? I've changed nothing...very confused! Any and all help is appreciated! Thank you for your time and consideration!