I am trying to use some data off the ncbi to create some taxonomies but first I am working on the importing step for my fastq data. It is single ended with quality. Here is the command: iime tools import --type SampleData[SequencesWithQuality] --input-path ./Manifest.csv --output-path single-end-de…

Good morning @misterman , Have you validated your sample metadata using Keemei ? I ask because I can see your absolute-filepaths and directions, but I don't see sample names in your table. Keemei will point out issues like this and help you make corrections. Let me know what you find! Colin

Hello @misterman . I am not affiliated with the Qiime team and just stumbled across this post randomly. I am not sure what the problem might be, but my gut feeling tells me that you'd be better off- also downstream - if you lost all the / characters in the sample-id field. For example the base name w…

Thank you! Sometimes a fresh pair of eyes is needed. I am missing the sample-ids. Thank you!

Hi @misterman - just curious, can you please confirm what version of QIIME 2 you are running? You can run qiime info for the details. Thanks!

The version I am running is qiime2 2019.4

QIIME 2 Forum

qiime tools import error "+_.+_L[0-9][0-9][0-9]_R[12]_001\\.fastq\\.gz"

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