Hi @jessicalmetcalf! To add to @colinbrislawn's reply:
All of the commands available under qiime tools
, qiime dev
, and qiime info
are built-in commands provided by the CLI, and aren't QIIME 2 plugins (that's why you're not seeing them listed on the Available Plugins page). As @colinbrislawn noted, the best place to learn about importing is the Importing tutorial. That page doesn't list all semantic types and data formats (we included the most common ones for now). We're actively working to have more complete documentation on importing soon (likely within the next couple of releases). We'll follow up here when that's available!
There will more complete documentation on this in the future (see my note above), but to see a complete list of importable semantic types and data formats you can use the --show-importable-types
and --show-importable-formats
options, which simply print that info and exit:
If you have any questions about specific types or formats, feel free to create a new forum topic. Thanks!