Qiime taxa filter-table; leading or trailing whitespace characters

[thermokarst]

@Tyler_Carrier

is there a custom command or script that has been developed to combat this issue?

You can follow the workflow outline here:

Qiime taxa filter-table error

Hi @mly! Looks like you found a bug! I opened a bug report up here: https://github.com/qiime2/q2-types/issues/179 Okay, so in the meantime, here is a solution for you to move forward: qiime tools export taxonomy.qza \ --output-dir taxonomy-with-spaces qiime metadata tabulate \ --m-input-file taxonomy-with-spaces/taxonomy.tsv \ --o-visualization taxonomy-as-metadata.qzv qiime tools export taxonomy-as-metadata.qzv \ --output-dir taxonomy-as-metadata qiime tools import \ --type…