qiime feature-table tabulate-seqs --i-data rep-seqs.qza --o-visualization rep-seqs.qzv

User Support
1

Hi, I don't know why suddenly this command does not work. It works yesterday.

"qiime feature-table tabulate-seqs --i-data rep-seqs.qza --o-visualization rep-seqs.qzv"

The error message is like this:
Fatal Python error: Py_Initialize: Unable to get the locale encoding
File "/apps/python/2.7.6/lib/python2.7/encodings/init.py", line 123
raise CodecRegistryError,
^
SyntaxError: invalid syntax

Current thread 0x00002ab76489be80 (most recent call first):
/tmp/slurmd/job66929876/slurm_script: line 19: 81352 Aborted

Can anybody help me with this?

Thanks!

Junli

2

Hello Junli,

Qiime 2 uses python 3, and this shows python 2.7, so I wonder if the Qiime2 conda environment was not activated? (Each time you close the terminal or restart your computer, you will have to activate the Qiime2 conda environment to run Qiime2 plugins and scripts.)

Can you try activating your Qiime2 conda environment and running that command again?

Colin

3

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