# qiime feature-classifier classify-sklearn Missing option

**URL:** https://forum.qiime2.org/t/qiime-feature-classifier-classify-sklearn-missing-option/30312
**Category:** Technical Support
**Tags:** feature-classifier, taxonomy
**Created:** [May 23, 2024, 7:15pm UTC](https://forum.qiime2.org/t/qiime-feature-classifier-classify-sklearn-missing-option/30312 "2024-05-23T19:15:50Z")
**Posts on this page:** 6
**Page:** 1

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### Author: ![LisethBolCol](https://forum.qiime2.org/user_avatar/forum.qiime2.org/lisethbolcol/32/18499_2.png) [@LisethBolCol](https://forum.qiime2.org/u/LisethBolCol)
#### Post date: [May 23, 2024, 7:15pm UTC](https://forum.qiime2.org/t/qiime-feature-classifier-classify-sklearn-missing-option/30312/1 "2024-05-23T19:15:50Z")

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Hello to all the community

I am performing bacterial microbiome analysis of pigeon fecal matter sequences using the Qiime program. I am using qiime2 with linux as windows subsystem and WSL2-Ubuntu-22.04

At this moment I am running the command to test the classifier, which is the following

qiime feature-classifier classify-sklearn   
--i-classifier classifier2040.qza \   
--i-reads rep-seqs-dada2.qza   
--o-classification taxonomy2040.qza

qiime metadata tabulate   
--m-input-file taxonomy2040.qza   
--o-visualization taxonomy2040.qzv

 ![image](https://forum-qiime2-org.s3.dualstack.us-west-2.amazonaws.com/original/3X/6/2/62db90edeb5c68be230f23f5a0da66a69341af99.png)

When I run it it gives me the following problem:

![image](https://forum-qiime2-org.s3.dualstack.us-west-2.amazonaws.com/original/3X/4/d/4d7857c0335cccbd05814a97c6cc17b4c7f37e11.png)

I don't understand what could be happening or if I have made a mistake before that this problem appears. If someone can please guide me on what I'm doing wrong, I would really appreciate it.

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### Author: ![timanix](https://forum.qiime2.org/user_avatar/forum.qiime2.org/timanix/32/17879_2.png) [@timanix](https://forum.qiime2.org/u/timanix)
#### Post date: [May 23, 2024, 8:02pm UTC](https://forum.qiime2.org/t/qiime-feature-classifier-classify-sklearn-missing-option/30312/2 "2024-05-23T20:02:17Z")

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Hello!  
Could you check if there are no spaces after each backslash in the same line?

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### Author: ![LisethBolCol](https://forum.qiime2.org/user_avatar/forum.qiime2.org/lisethbolcol/32/18499_2.png) [@LisethBolCol](https://forum.qiime2.org/u/LisethBolCol)
#### Post date: [May 23, 2024, 9:10pm UTC](https://forum.qiime2.org/t/qiime-feature-classifier-classify-sklearn-missing-option/30312/3 "2024-05-23T21:10:31Z")

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Hello and thank you very much for helping me.

I checked and noticed that one of the command lines had a space and I already corrected it. For now it seems to be running without a problem.

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### Author: ![LisethBolCol](https://forum.qiime2.org/user_avatar/forum.qiime2.org/lisethbolcol/32/18499_2.png) [@LisethBolCol](https://forum.qiime2.org/u/LisethBolCol)
#### Post date: [May 23, 2024, 9:30pm UTC](https://forum.qiime2.org/t/qiime-feature-classifier-classify-sklearn-missing-option/30312/4 "2024-05-23T21:30:01Z")

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Hello timanix, thank you very much for your advice. The truth is I didn't know that a small space after the diagonal line could cause errors. Thank you very much, I will be more attentive.

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### Author: ![timanix](https://forum.qiime2.org/user_avatar/forum.qiime2.org/timanix/32/17879_2.png) [@timanix](https://forum.qiime2.org/u/timanix)
#### Post date: [May 24, 2024, 4:48am UTC](https://forum.qiime2.org/t/qiime-feature-classifier-classify-sklearn-missing-option/30312/5 "2024-05-24T04:48:17Z")

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> [@LisethBolCol](#):
>
> The truth is I didn't know that a small space after the diagonal line could cause errors.

I didn't know it as well until I put one there and encountered the same error =).

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### Author: ![system](https://forum-qiime2-org.s3.dualstack.us-west-2.amazonaws.com/original/3X/2/1/21af5fe23cb6f4579467c66a9ed94e55274ca7bd.svg) [@system](https://forum.qiime2.org/u/system)
#### Post date: [June 24, 2024, 10:48am UTC](https://forum.qiime2.org/t/qiime-feature-classifier-classify-sklearn-missing-option/30312/6 "2024-06-24T10:48:57Z")

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