Following the usual install of Qiime 2 2022.8 as described in the docs for a Miniconda install on Linux will lead to a broken install due to a mismatch in HDF5 libraries. (base) cdiener@X [~] conda activate qiime2-2022.8 …

Hey all, Environment files are updated. Please download and reinstall like normal. Things should be working again. We identified the issue, it involved a few pieces. The first piece was that bioconda did a reasonably routine "bulk update" of their packages, which included unifrac-binaries . This…

The issue seem to be broken dependency pins in bioconda/unifrac 1.1.1, especially the ones derived from the pin_compatible macro. Those are not compatible to what was used to build bioconda/unifrac-binaries 1.1.1 ( h7e6beb3_2 which were built with hdf5 1.12.1. OSX should be unaffected as long as the…

Meet same issue. ImportError: libhdf5_cpp.so.200: cannot open shared object file: No such file or directory

I also face this problem, trying to install Qiime2 on ubuntu 20.04 after a fresh Miniconda install.

Adding to the report, in case it helps. I'm currently getting the same error while building the Qiita Q2 plugin ; however, it worked fine 4 days ago ; so I think is something that change 3 days - like a dependency or build.

Hi all, Thanks for sharing these reports - all of us on the QIIME 2 core team are currently investigating this, and have been able to reproduce this on our end as well. We are actively working on a fix for this, and will circle back here with details and a solution once that's available. Thanks for…

Thank you! I can confirm that the build is now passing . @ebolyen , trying to minimize effort, do you think it will be possible to issue a PR for the unifrac-binaries?

Recipe updated and waiting on merge, thanks @ebolyen !

Thanks for the update @wasade !

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Qiime 2022.8 install broken on linux (incorrect HDF5 versions)

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