I am attempting to filter my OTU table so that it only includes OTUs classified in Kingdom Fungi. I tried the following command and received the following error:
qiime taxa filter-table --i-table otu_table.qza --i-taxonomy taxonomy.qza --p-include k__Fungi --o-filtered-table otu_table.only.Fungi.qza
Error: QIIME 2 plugin ‘taxa’ has no action ‘filter-table’.
Any help would be appreciated.
What version of QIIME 2 are you running? It looks like you are most likely running an outdated version that does not have that command (we release new versions every 2 months currently).
I recommend installing the latest version (2018.4) and that should be all you need!
Let us know if you’re still having trouble with this command after that!
This topic was automatically closed 31 days after the last reply. New replies are no longer allowed.