A follow up question, please :pray: Is the new FeatureTable after batch effect normalization by perc-norm equivalent to the FeatureTable from denoising (dada2)? Can I use it for for my downstream analysis like composition, diversity, taxa etc... Thanks :handshake:

The FeatureTable after batch correction via percentile normalization is a FeatureTable[PercentileNormalized] table. It is not equivalent to the FeatureTable from denoising, as it contains percentile-normalized data (rather than read counts). The rows and columns are the same, but the values inside t…

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