Thank you so much.
Here is the full error:
^M 0%| | 0/16 [00:00<?, ?sample(s)/s]Using license file /Users/silviac/gurobi.lic
Academic license - for non-commercial use only - expires 2021-01-30
Read LP format model from file /var/folders/sc/zmkl46796djgg04cb7k9b8jm0000gn/T/tmp88c65jvi.lp
Reading time = 0.05 seconds
: 4423 rows, 14261 columns, 55117 nonzeros
^M 0%| | 0/16 [00:01<?, ?sample(s)/s]
multiprocessing.pool.RemoteTraceback:
“”"
Traceback (most recent call last):
File “/Users/silviac/opt/anaconda3/envs/qiime2-2020.8/lib/python3.6/multiprocessing/pool.py”, line 119, in worker
result = (True, func(*args, **kwds))
File “/Users/silviac/opt/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/micom/workflows/grow.py”, line 18, in _growth
com = load_pickle§
File “/Users/silviac/opt/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/micom/util.py”, line 74, in load_pickle
mod = pickle.load(infile)
File “/Users/silviac/opt/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/optlang/gurobi_interface.py”, line 604, in setstate
self.configuration = Configuration.clone(repr_dict[‘config’], problem=self) # TODO: make configuration work
File “/Users/silviac/opt/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/optlang/interface.py”, line 1002, in clone
parameters[“tolerances”] = config.tolerances.to_dict()
File “/Users/silviac/opt/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/optlang/util.py”, line 290, in to_dict
return {key: getattr(self, key) for key in self._functions.keys()}
File “/Users/silviac/opt/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/optlang/util.py”, line 290, in
return {key: getattr(self, key) for key in self._functions.keys()}
File “/Users/silviac/opt/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/optlang/util.py”, line 280, in getattr
return self._functions[item]0
File “/Users/silviac/opt/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/optlang/gurobi_interface.py”, line 483, in _get_feasibility
return getattr(self.problem.problem.params, “FeasibilityTol”)
AttributeError: ‘NoneType’ object has no attribute ‘problem’
“”"
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File “/Users/silviac/opt/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/q2cli/commands.py”, line 329, in call
results = action(**arguments)
File “”, line 2, in grow
File “/Users/silviac/opt/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/qiime2/sdk/action.py”, line 245, in bound_callable
output_types, provenance)
File “/Users/silviac/opt/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/qiime2/sdk/action.py”, line 390, in callable_executor
output_views = self._callable(**view_args)
File “/Users/silviac/opt/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/q2_micom/_growth.py”, line 25, in grow
manifest, model_folder, medium, tradeoff, threads)
File “/Users/silviac/opt/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/micom/workflows/grow.py”, line 124, in grow
results = workflow(_growth, args, threads)
File “/Users/silviac/opt/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/micom/workflows/core.py”, line 41, in workflow
results = list(it)
File “/Users/silviac/opt/anaconda3/envs/qiime2-2020.8/lib/python3.6/site-packages/tqdm/std.py”, line 1193, in iter
for obj in iterable:
File “/Users/silviac/opt/anaconda3/envs/qiime2-2020.8/lib/python3.6/multiprocessing/pool.py”, line 735, in next
raise value
AttributeError: ‘NoneType’ object has no attribute ‘problem’
/var/folders/sc/zmkl46796djgg04cb7k9b8jm0000gn/T/qiime2-q2cli-err-y39t_rvv.log (END)