ITSxpress v1.7.2 fixes bug causing "Line 17" errors.
@omera.WIS @einamart @bsen2018 @Nicholas_Bokulich @ebolyen
Impact
- Fixes an error that occasionally caused come
qiime itsxpressruns to crash. - Fixes an error in the way that HMMER data was parsed that caused about 0.2% of reads to be incorrectly trimmed, including some to be trimmed to length 0 which was causing the Qiime issue.
- For more details see: Improper handling when no fungal sequences are found in a processed file · Issue #8 · USDA-ARS-GBRU/itsxpress · GitHub
How to fix
To update make sure that both itsxpress and q2-itsxpress are at version 1.7.2
From conda (should be available in a few hours):
conda install -c bioconda itsxpress==1.7.2
Or if you can't wait: from PIP:
pip install itsxpress==1.7.2
The plugin is versioned differently and requires itsxpress. You must update itsxpress to get the fix. You should check that the qiime plugin q2-itsxpress is also up to date:
pip install q2-itsxpress==1.7.2