I’m coming to really like gneiss, but I’d like to make sure I understand all of my differential abundance options.
I’ve installed q2_dsfdr according to https://github.com/serenejiang/q2_dsfdr and see a new entry in my QIIME 2 studio, indicating that dsfdr takes a feature table as input and produces alpha diversity data.
I thought q2_dsfdr was an alternative to ancom or gneiss, for determining what OTUs are differentially expressed in my samples, according to the sample meta data.
Did I get that wrong? Where can I see a worked example?
thanks,
Mark