There was a problem importing new:
new/Barpear_NP_3-Endo-AT_S10_L001_R1_001.fastq.gz is not a(n) FastqGzFormat file:
Header on line 13 is not FASTQ, records may be misaligned
NOTE: 1. When i tried to import particular files it worked, i don’t understand why.
2. Those file were paired-end reads and i did some manipulation on the files before i tried to import them (PEAR, Bowtie and some other name changing)
If you were to decompress Barpear_NP_3-Endo-AT_S10_L001_R1_001.fastq.gz (with something like gunzip or whatever utility your OS has baked in), what is in the first 15 lines?
Would you be able to run head with something like -n 15? It looks like line 13 is specifically suspect.
And then you can paste in your response with a “code fence” which will avoid treating any of the contents like markup:
```text
The triple backtick (~` key) will treat everything within it as un-formatted text.
Adding "text" or a language like "bash" at the end of the starting fence will set the
syntax highlighting.
```
OK, thank you @ebolyen
i solved my problem.
the two dashes that somehow (i guess with grep), entered my sequences did all the mess.
so i just removed those line away.
thank you again!