Hello I want to construct phylogenetic tree for bacterial sequence. I used a reference-based fragment insertion approach. This is the command I ran qiime fragment-insertion sepp --i-representative-sequences si_cs.qza --p-threads 40 --p-alignment-subset-size 1000 --p-placement-subset-size 5000 -…

Problem with Phylogenetic tree construction

jwdebelius (Justine Debelius) October 30, 2019, 10:50am 8

Based on your other post, is this ITS or 16s? The current fragment insertion doesn't support ITS.

Best,
Justine