I'm pretty new to Qiime2 and have been using it for ITS sequence classification. I have an issue as when I am classifying my sequences i keep getting large amounts of barplots returning:
"k__Fungi;;;;;;"
This is 99% in some cases. I presume I have done something wrong and I have no idea what it is.
Appreciate any help I can get.
This is a common issue with fungal sequences — it could indicate one of a few different possible problems either with the query sequences or the classifier (e.g., wrong input sequences, wrong orientation). I recommend checking out the topics here as a starting point for troubleshooting different possible issues: https://forum.qiime2.org/search?q=fungi%20classification%20kingdom%20level