I believe that I have a working plugin now. Now I’m trying to build some unittests for it.
Using the q2_types plugin as inspirations, I have made some tests to sanity check the types and the formats. However, when I run these tests (which can be found in test_regression.py) I get the following error
tests-MacBook-Pro-4:tests mortonjt$ python test_regression.py
FF
======================================================================
FAIL: test_regression_linear_lme_to_regression_fmt_registration (__main__.TestTypes)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Users/mortonjt/miniconda3/envs/gneiss/lib/python3.5/site-packages/qiime-2.0.6-py3.5.egg/qiime/plugin/testing.py", line 36, in setUp
self.fail('%s is not a registered QIIME 2 plugin.' % package)
AssertionError: gneiss is not a registered QIIME 2 plugin.
======================================================================
FAIL: test_regression_type_registration (__main__.TestTypes)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Users/mortonjt/miniconda3/envs/gneiss/lib/python3.5/site-packages/qiime-2.0.6-py3.5.egg/qiime/plugin/testing.py", line 36, in setUp
self.fail('%s is not a registered QIIME 2 plugin.' % package)
AssertionError: gneiss is not a registered QIIME 2 plugin.
----------------------------------------------------------------------
Ran 2 tests in 0.001s
This is a little confusing, since the qiime command shows that my plugin is installed
(gneiss) tests-MacBook-Pro-4:tests mortonjt$ qiime
Usage: qiime [OPTIONS] COMMAND [ARGS]...
QIIME 2 command-line interface (q2cli)
--------------------------------------
To get help with QIIME 2, visit https://qiime2.org.
To enable tab completion in Bash, run the following command or add it to
your .bashrc/.bash_profile:
source tab-qiime
To enable tab completion in ZSH, run the following commands or add them to
your .zshrc:
autoload bashcompinit && bashcompinit && source tab-qiime
Options:
--version Show the version and exit.
--help Show this message and exit.
Commands:
info Display information about current deployment.
tools Tools for working with QIIME 2 files.
dev Utilities for developers and advanced users.
composition
gneiss
Are there additional steps required for registering a plugin? Thanks!