(qiime2-2018.6) LabOfMarineProtistanEcophysioloygy:test lompe$ qiime vsearch uchime-ref \
--i-table closedref/table_closed_97.qza \
--i-sequences closedref/rep-seqs_closed_97.qza \
--i-reference-sequences /Users/lompe/test/pr2.qza \
--p-threads 8 \
--output-dir chimera_ref_dir
Plugin error from vsearch:
/var/folders/kv/pkjw8_2d2_x9ydbtrbt_ns9c0000gn/T/q2-UchimeStatsFmt-2t6ckkl5 is not a(n) UchimeStatsFmt file:
Incorrect number of fields detected on line 2. Should be exactly 18.
Debug info has been saved to /var/folders/kv/pkjw8_2d2_x9ydbtrbt_ns9c0000gn/T/qiime2-q2cli-err-6lm2mq6p.log
I’m not too sure what is going wrong here — would you be able to provide the files necessary for us to rerun this command? If not, can you at least try re-running with the --verbose flag? Please copy and paste all results. Thanks!
with us? We would like to see if we can recreate this error. You can send a download link in a private message to me if you don’t want to share publicly. Thanks!
@Don - I received the files you sent me, unfortunately they aren’t the files I requested, so I can’t use them for any debugging purposes. I need the three files that you used to run the command above, that way I can reproduce the error locally. Thanks!