Hi All,
first I run
(qiime2-amplicon-2024.5) srinivasanmahalingam@mwc-202252 ~ % qiime dada2 denoise-paired \
--i-demultiplexed-seqs demux-paired-end.qza
--p-trunc-len-f 120
--p-trunc-len-r 120
--o-table table.qza
--o-representative-sequences rep-seqs.qza
--o-denoising-stats denoising-stats.qza
then I run
qiime dada2 denoise-paired
--i-demultiplexed-seqs demux-paired-end.qza
--p-trunc-len-f 0
--p-trunc-len-r 0
--o-table table.qza
--o-representative-sequences rep-seqs.qza
--o-denoising-stats denoising-stats.qza
getting error as follows
Plugin error from dada2:
An error was encountered while running DADA2 in R (return code 1), please inspect stdout and stderr to learn more.
Debug info has been saved to /var/folders/gx/9zlbmhs13qj0ws5sbbjrxyfh0000gn/T/qiime2-q2cli-err-y7fenult.log
Look at demux-paired-end.qzv
Please help me! if anything, I missed anything?. Q2-fondue was not working for me. So went through fastq-dump for downloading SRA file from NCBI.